molgri
main
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molgri
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__init__() (molgri.logfiles.AbstractLogger method)
(molgri.molecules.parsers.FileParser method)
(molgri.molecules.parsers.ParsedEnergy method)
(molgri.molecules.parsers.ParsedMolecule method)
(molgri.molecules.parsers.ParsedTrajectory method)
(molgri.molecules.parsers.PtParser method)
(molgri.molecules.parsers.XVGParser method)
(molgri.molecules.pts.Pseudotrajectory method)
(molgri.molecules.transitions.SimulationHistogram method)
(molgri.molecules.transitions.SQRA method)
(molgri.molecules.transitions.TransitionModel method)
(molgri.molecules.writers.PtIOManager method)
(molgri.molecules.writers.PtWriter method)
(molgri.naming.FullGridNameParser method)
(molgri.naming.GridNameParser method)
(molgri.naming.NameParser method)
(molgri.plotting.abstract.MultiRepresentationCollection method)
(molgri.plotting.abstract.PanelRepresentationCollection method)
(molgri.plotting.abstract.RepresentationCollection method)
(molgri.plotting.fullgrid_plots.ConvergenceFullGridPlot method)
(molgri.plotting.fullgrid_plots.FullGridPlot method)
(molgri.plotting.fullgrid_plots.PanelConvergenceFullGridPlots method)
(molgri.plotting.molecule_plots.ConvergenceMultiCollection method)
(molgri.plotting.molecule_plots.TrajectoryPlot method)
(molgri.plotting.other_plots.ArrayPlot method)
(molgri.plotting.spheregrid_plots.ConvergenceSphereGridPlot method)
(molgri.plotting.spheregrid_plots.PanelConvergenceSphereGridPlots method)
(molgri.plotting.spheregrid_plots.PanelSphereGridPlots method)
(molgri.plotting.spheregrid_plots.PolytopePlot method)
(molgri.plotting.spheregrid_plots.SphereGridPlot method)
(molgri.plotting.transition_plots.TransitionPlot method)
(molgri.space.fullgrid.ConvergenceFullGridO method)
(molgri.space.fullgrid.FullGrid method)
(molgri.space.fullgrid.FullVoronoiGrid method)
(molgri.space.fullgrid.Point method)
(molgri.space.polytopes.Cube3DPolytope method)
(molgri.space.polytopes.Cube4DPolytope method)
(molgri.space.polytopes.IcosahedronPolytope method)
(molgri.space.polytopes.PolyhedronFromG method)
(molgri.space.polytopes.Polytope method)
(molgri.space.rotobj.ConvergenceSphereGridFactory method)
(molgri.space.rotobj.Cube3DRotations method)
(molgri.space.rotobj.Cube4DRotations method)
(molgri.space.rotobj.IcoAndCube3DRotations method)
(molgri.space.rotobj.IcoRotations method)
(molgri.space.rotobj.SphereGridNDim method)
(molgri.space.translations.TranslationParser method)
A
AbstractLogger (class in molgri.logfiles)
add_colorbar() (molgri.plotting.abstract.MultiRepresentationCollection method)
add_legend() (molgri.plotting.abstract.MultiRepresentationCollection method)
add_titles() (molgri.plotting.abstract.MultiRepresentationCollection method)
algorithm_name (molgri.space.rotobj.Cube3DRotations attribute)
(molgri.space.rotobj.Cube4DRotations attribute)
(molgri.space.rotobj.IcoAndCube3DRotations attribute)
(molgri.space.rotobj.IcoRotations attribute)
(molgri.space.rotobj.RandomERotations attribute)
(molgri.space.rotobj.RandomQRotations attribute)
(molgri.space.rotobj.SphereGridNDim attribute)
(molgri.space.rotobj.SystemERotations attribute)
(molgri.space.rotobj.ZeroRotations attribute)
all_row_norms_equal_k() (in module molgri.assertions)
all_row_norms_similar() (in module molgri.assertions)
all_rows_unique() (in module molgri.assertions)
angle_between_vectors() (in module molgri.space.utils)
animate_figure_view() (molgri.plotting.abstract.MultiRepresentationCollection method)
ArrayPlot (class in molgri.plotting.other_plots)
as_parsed_molecule() (molgri.molecules.parsers.FileParser method)
assert_two_sets_of_eulers_equal() (in module molgri.assertions)
assign_coms_2_grid_points() (molgri.molecules.parsers.ParsedTrajectory method)
C
cart2sph() (in module molgri.space.utils)
cart2sphA() (in module molgri.space.utils)
check_equality() (in module molgri.assertions)
construct_pt() (molgri.molecules.writers.PtIOManager method)
construct_pt_and_time() (molgri.molecules.writers.PtIOManager method)
ConvergenceFullGridO (class in molgri.space.fullgrid)
ConvergenceFullGridPlot (class in molgri.plotting.fullgrid_plots)
ConvergenceMultiCollection (class in molgri.plotting.molecule_plots)
ConvergenceSphereGridFactory (class in molgri.space.rotobj)
ConvergenceSphereGridPlot (class in molgri.plotting.spheregrid_plots)
count_points_within_alpha() (in module molgri.space.analysis)
create() (molgri.space.fullgrid.ConvergenceFullGridO class method)
(molgri.space.rotobj.ConvergenceSphereGridFactory method)
(molgri.space.rotobj.SphereGridFactory class method)
create_all_plots() (molgri.plotting.fullgrid_plots.FullGridPlot method)
(molgri.plotting.molecule_plots.ConvergenceMultiCollection method)
(molgri.plotting.molecule_plots.TrajectoryPlot method)
(molgri.plotting.spheregrid_plots.PanelSphereGridPlots method)
(molgri.plotting.spheregrid_plots.PolytopePlot method)
(molgri.plotting.spheregrid_plots.SphereGridPlot method)
Cube3DPolytope (class in molgri.space.polytopes)
Cube3DRotations (class in molgri.space.rotobj)
Cube4DPolytope (class in molgri.space.polytopes)
Cube4DRotations (class in molgri.space.rotobj)
D
deprecated() (in module molgri.wrappers)
detect_all_cubes() (in module molgri.space.polytopes)
detect_all_squares() (in module molgri.space.polytopes)
determine_pt_name() (molgri.molecules.writers.PtIOManager method)
dist_on_sphere() (in module molgri.space.utils)
divide_edges() (molgri.space.polytopes.Cube3DPolytope method)
(molgri.space.polytopes.Cube4DPolytope method)
(molgri.space.polytopes.IcosahedronPolytope method)
(molgri.space.polytopes.Polytope method)
F
FileParser (class in molgri.molecules.parsers)
find_first_free_index() (in module molgri.logfiles)
find_voronoi_vertices_of_point() (molgri.space.fullgrid.FullVoronoiGrid method)
first_index_free_4_all() (in module molgri.logfiles)
form_cube() (in module molgri.assertions)
form_square_array() (in module molgri.assertions)
format_name() (in module molgri.logfiles)
FullGrid (class in molgri.space.fullgrid)
FullGridNameParser (class in molgri.naming)
FullGridPlot (class in molgri.plotting.fullgrid_plots)
FullVoronoiGrid (class in molgri.space.fullgrid)
G
gen_and_time() (molgri.space.rotobj.SphereGridNDim method)
gen_grid() (molgri.space.rotobj.SphereGridNDim method)
generate_c_molecule() (molgri.molecules.parsers.PtParser method)
generate_frame_as_double_molecule() (molgri.molecules.parsers.PtParser method)
generate_frame_as_molecule() (molgri.molecules.parsers.FileParser method)
generate_pseudotrajectory() (molgri.molecules.pts.Pseudotrajectory method)
generate_r_molecule() (molgri.molecules.parsers.PtParser method)
get_alg() (molgri.naming.GridNameParser method)
get_all_assignments() (molgri.molecules.transitions.SimulationHistogram method)
get_all_columns() (molgri.molecules.parsers.XVGParser method)
get_all_COM() (molgri.molecules.parsers.ParsedTrajectory method)
get_all_distances_between_centers() (molgri.space.fullgrid.FullVoronoiGrid method)
get_all_distances_between_centers_as_numpy() (molgri.space.fullgrid.FullVoronoiGrid method)
get_all_energies() (molgri.molecules.parsers.ParsedTrajectory method)
get_all_labels() (molgri.molecules.parsers.XVGParser method)
get_all_voronoi_surfaces() (molgri.space.fullgrid.FullVoronoiGrid method)
get_all_voronoi_surfaces_as_numpy() (molgri.space.fullgrid.FullVoronoiGrid method)
get_all_voronoi_volumes() (molgri.space.fullgrid.FullVoronoiGrid method)
get_area_above() (molgri.space.fullgrid.Point method)
get_area_below() (molgri.space.fullgrid.Point method)
get_atom_selection_c() (molgri.molecules.parsers.ParsedTrajectory method)
get_atom_selection_r() (molgri.molecules.parsers.ParsedTrajectory method)
get_atoms() (molgri.molecules.parsers.ParsedMolecule method)
get_between_radii() (molgri.space.fullgrid.FullGrid method)
get_body_rotations() (molgri.space.fullgrid.FullGrid method)
get_box() (molgri.molecules.parsers.ParsedMolecule method)
get_cell_volume() (molgri.space.fullgrid.Point method)
get_center_of_mass() (molgri.molecules.parsers.ParsedMolecule method)
get_column_index_by_name() (molgri.molecules.parsers.XVGParser method)
get_convergence_df() (molgri.space.rotobj.SphereGridNDim method)
get_decorator_name() (molgri.molecules.writers.PtIOManager method)
(molgri.space.rotobj.SphereGridNDim method)
get_dim() (molgri.naming.GridNameParser method)
get_distance_between_centers() (molgri.space.fullgrid.FullVoronoiGrid method)
get_division_area() (molgri.space.fullgrid.FullVoronoiGrid method)
get_dt() (molgri.molecules.parsers.FileParser method)
get_eigenval_eigenvec() (molgri.molecules.transitions.TransitionModel method)
get_energies() (molgri.molecules.parsers.ParsedEnergy method)
get_file_path_topology() (molgri.molecules.parsers.FileParser method)
get_file_path_trajectory() (molgri.molecules.parsers.FileParser method)
get_flat_position_grid() (molgri.space.fullgrid.FullGrid method)
get_full_grid() (molgri.molecules.pts.Pseudotrajectory method)
(molgri.space.fullgrid.FullGrid method)
get_full_voronoi_grid() (molgri.space.fullgrid.FullGrid method)
get_generation_times() (molgri.space.rotobj.ConvergenceSphereGridFactory method)
get_grid_as_array() (molgri.space.rotobj.SphereGridNDim method)
get_grid_path() (molgri.space.rotobj.SphereGridNDim method)
get_increments() (molgri.space.translations.TranslationParser method)
get_list_sphere_grids() (molgri.space.rotobj.ConvergenceSphereGridFactory method)
get_molecule() (molgri.molecules.pts.Pseudotrajectory method)
get_N() (molgri.naming.GridNameParser method)
(molgri.space.rotobj.SphereGridNDim method)
get_N_ordered_points() (molgri.space.polytopes.Polytope method)
get_N_trans() (molgri.space.translations.TranslationParser method)
get_name() (molgri.molecules.parsers.ParsedTrajectory method)
(molgri.molecules.transitions.SimulationHistogram method)
(molgri.molecules.transitions.TransitionModel method)
(molgri.molecules.writers.PtIOManager method)
(molgri.space.fullgrid.ConvergenceFullGridO method)
(molgri.space.fullgrid.FullGrid method)
(molgri.space.fullgrid.FullVoronoiGrid method)
(molgri.space.rotobj.ConvergenceSphereGridFactory method)
(molgri.space.rotobj.SphereGridNDim method)
get_node_coordinates() (molgri.space.polytopes.Polytope method)
get_normalised_point() (molgri.space.fullgrid.Point method)
get_num_b_rot() (molgri.naming.FullGridNameParser method)
get_num_o_rot() (molgri.naming.FullGridNameParser method)
get_num_unique_com() (molgri.molecules.parsers.ParsedTrajectory method)
get_only_lowest_highest() (molgri.molecules.parsers.ParsedTrajectory method)
get_parsed_energy() (molgri.molecules.parsers.XVGParser method)
get_parsed_trajectory() (molgri.molecules.parsers.FileParser method)
(molgri.molecules.parsers.PtParser method)
get_position_grid() (molgri.space.fullgrid.FullGrid method)
get_positions() (molgri.molecules.parsers.ParsedMolecule method)
get_possible_title() (molgri.plotting.abstract.RepresentationCollection method)
(molgri.plotting.fullgrid_plots.ConvergenceFullGridPlot method)
(molgri.plotting.fullgrid_plots.FullGridPlot method)
(molgri.plotting.molecule_plots.TrajectoryPlot method)
(molgri.plotting.spheregrid_plots.ConvergenceSphereGridPlot method)
(molgri.plotting.spheregrid_plots.SphereGridPlot method)
get_projection_coordinates() (molgri.space.polytopes.Polytope method)
get_radii() (molgri.space.fullgrid.FullGrid method)
get_radius_above() (molgri.space.fullgrid.Point method)
get_radius_below() (molgri.space.fullgrid.Point method)
get_spherical_voronoi_areas() (molgri.space.rotobj.ConvergenceSphereGridFactory method)
get_spherical_voronoi_cells() (molgri.space.rotobj.SphereGridNDim method)
get_standard_full_grid_name() (molgri.naming.FullGridNameParser method)
get_standard_grid_name() (molgri.naming.GridNameParser method)
get_statistics_path() (molgri.space.rotobj.SphereGridNDim method)
get_topology_file_name() (molgri.molecules.parsers.FileParser method)
get_trajectory_file_name() (molgri.molecules.parsers.FileParser method)
get_trans_grid() (molgri.space.translations.TranslationParser method)
get_transitions_matrix() (molgri.molecules.transitions.MSM method)
(molgri.molecules.transitions.SQRA method)
(molgri.molecules.transitions.TransitionModel method)
get_uniformity_df() (molgri.space.rotobj.SphereGridNDim method)
get_unique_com() (molgri.molecules.parsers.ParsedTrajectory method)
get_unique_com_till_N() (molgri.molecules.parsers.ParsedTrajectory method)
get_vertices() (molgri.space.fullgrid.Point method)
get_vertices_above() (molgri.space.fullgrid.Point method)
get_vertices_below() (molgri.space.fullgrid.Point method)
get_volume() (molgri.space.fullgrid.FullVoronoiGrid method)
get_voronoi_areas() (molgri.space.rotobj.SphereGridNDim method)
get_voronoi_discretisation() (molgri.space.fullgrid.FullVoronoiGrid method)
get_voronoi_volumes() (molgri.space.fullgrid.ConvergenceFullGridO method)
get_y_unit() (molgri.molecules.parsers.XVGParser method)
get_z_projection_grid() (molgri.space.rotobj.IcoAndCube3DRotations method)
grid2quaternion() (in module molgri.space.rotations)
grid2rotation() (in module molgri.space.rotations)
GridNameParser (class in molgri.naming)
I
IcoAndCube3DRotations (class in molgri.space.rotobj)
IcoRotations (class in molgri.space.rotobj)
IcosahedronPolytope (class in molgri.space.polytopes)
is_array_with_d_dim_r_rows_c_columns() (in module molgri.assertions)
L
log_set_up() (molgri.logfiles.AbstractLogger method)
(molgri.logfiles.PtLogger method)
M
make_all_COM_3d_plots() (molgri.plotting.molecule_plots.ConvergenceMultiCollection method)
make_all_COM_hammer_plots() (molgri.plotting.molecule_plots.ConvergenceMultiCollection method)
make_all_convergence_plots() (molgri.plotting.spheregrid_plots.PanelSphereGridPlots method)
make_all_energy_plots() (molgri.plotting.molecule_plots.ConvergenceMultiCollection method)
make_all_grid_plots() (molgri.plotting.spheregrid_plots.PanelSphereGridPlots method)
make_all_spheregrid_time_plots() (molgri.plotting.spheregrid_plots.PanelConvergenceSphereGridPlots method)
make_all_uniformity_plots() (molgri.plotting.spheregrid_plots.PanelSphereGridPlots method)
make_all_voronoi_area_plots() (molgri.plotting.spheregrid_plots.PanelConvergenceSphereGridPlots method)
make_all_voronoi_volume_plots() (molgri.plotting.fullgrid_plots.PanelConvergenceFullGridPlots method)
make_cell_plot() (molgri.plotting.spheregrid_plots.PolytopePlot method)
make_COM_plot() (molgri.plotting.molecule_plots.TrajectoryPlot method)
make_convergence_plot() (molgri.plotting.spheregrid_plots.SphereGridPlot method)
make_eigenvalues_plot() (molgri.plotting.transition_plots.TransitionPlot method)
make_eigenvectors_plot() (molgri.plotting.transition_plots.TransitionPlot method)
make_energy_COM_plot() (molgri.plotting.molecule_plots.TrajectoryPlot method)
make_energy_violin_plot() (molgri.plotting.molecule_plots.TrajectoryPlot method)
make_full_voronoi_plot() (molgri.plotting.fullgrid_plots.FullGridPlot method)
make_graph() (molgri.plotting.spheregrid_plots.PolytopePlot method)
make_grid_colored_with_alpha() (molgri.plotting.spheregrid_plots.SphereGridPlot method)
make_grid_plot() (molgri.plotting.spheregrid_plots.SphereGridPlot method)
make_heatmap_plot() (molgri.plotting.other_plots.ArrayPlot method)
make_its_plot() (molgri.plotting.transition_plots.TransitionPlot method)
make_molecule_plot() (molgri.plotting.molecule_plots.TrajectoryPlot method)
make_neighbours_plot() (molgri.plotting.spheregrid_plots.PolytopePlot method)
make_node_plot() (molgri.plotting.spheregrid_plots.PolytopePlot method)
make_one_eigenvector_plot() (molgri.plotting.transition_plots.TransitionPlot method)
make_ordering_animation() (molgri.plotting.spheregrid_plots.SphereGridPlot method)
make_point_vertices_plot() (molgri.plotting.fullgrid_plots.FullGridPlot method)
make_position_plot() (molgri.plotting.fullgrid_plots.FullGridPlot method)
make_rot_animation() (molgri.plotting.spheregrid_plots.SphereGridPlot method)
make_spheregrid_time_plot() (molgri.plotting.spheregrid_plots.ConvergenceSphereGridPlot method)
make_spherical_voronoi_plot() (molgri.plotting.spheregrid_plots.SphereGridPlot method)
make_trans_animation() (molgri.plotting.spheregrid_plots.SphereGridPlot method)
make_uniformity_plot() (molgri.plotting.spheregrid_plots.SphereGridPlot method)
make_voronoi_area_conv_plot() (molgri.plotting.spheregrid_plots.ConvergenceSphereGridPlot method)
make_voronoi_volume_conv_plot() (molgri.plotting.fullgrid_plots.ConvergenceFullGridPlot method)
module
molgri
molgri.assertions
molgri.constants
molgri.logfiles
molgri.molecules
molgri.molecules.parsers
molgri.molecules.pts
molgri.molecules.transitions
molgri.molecules.writers
molgri.naming
molgri.paths
molgri.plotting
molgri.plotting.abstract
molgri.plotting.fullgrid_plots
molgri.plotting.molecule_plots
molgri.plotting.other_plots
molgri.plotting.spheregrid_plots
molgri.plotting.transition_plots
molgri.space
molgri.space.analysis
molgri.space.fullgrid
molgri.space.polytopes
molgri.space.rotations
molgri.space.rotobj
molgri.space.translations
molgri.space.utils
molgri.wrappers
molgri
module
molgri.assertions
module
molgri.constants
module
molgri.logfiles
module
molgri.molecules
module
molgri.molecules.parsers
module
molgri.molecules.pts
module
molgri.molecules.transitions
module
molgri.molecules.writers
module
molgri.naming
module
molgri.paths
module
molgri.plotting
module
molgri.plotting.abstract
module
molgri.plotting.fullgrid_plots
module
molgri.plotting.molecule_plots
module
molgri.plotting.other_plots
module
molgri.plotting.spheregrid_plots
module
molgri.plotting.transition_plots
module
molgri.space
module
molgri.space.analysis
module
molgri.space.fullgrid
module
molgri.space.polytopes
module
molgri.space.rotations
module
molgri.space.rotobj
module
molgri.space.translations
module
molgri.space.utils
module
molgri.wrappers
module
MSM (class in molgri.molecules.transitions)
MultiRepresentationCollection (class in molgri.plotting.abstract)
N
N_eye_matrices() (in module molgri.space.rotations)
NameParser (class in molgri.naming)
nan_free_assignments() (molgri.space.fullgrid.FullGrid method)
norm_per_axis() (in module molgri.space.utils)
normalise_vectors() (in module molgri.space.utils)
P
PanelConvergenceFullGridPlots (class in molgri.plotting.fullgrid_plots)
PanelConvergenceSphereGridPlots (class in molgri.plotting.spheregrid_plots)
PanelRepresentationCollection (class in molgri.plotting.abstract)
PanelSphereGridPlots (class in molgri.plotting.spheregrid_plots)
ParsedEnergy (class in molgri.molecules.parsers)
ParsedMolecule (class in molgri.molecules.parsers)
ParsedTrajectory (class in molgri.molecules.parsers)
paths_free_4_all() (in module molgri.logfiles)
plot_voronoi_cells() (in module molgri.plotting.abstract)
Point (class in molgri.space.fullgrid)
point2cell_position_grid() (molgri.space.fullgrid.FullGrid method)
points2cell_scipy() (molgri.space.fullgrid.FullGrid method)
PolyhedronFromG (class in molgri.space.polytopes)
Polytope (class in molgri.space.polytopes)
PolytopePlot (class in molgri.plotting.spheregrid_plots)
prepare_statistics() (in module molgri.space.analysis)
provide_unique() (in module molgri.space.rotobj)
Pseudotrajectory (class in molgri.molecules.pts)
PtIOManager (class in molgri.molecules.writers)
PtLogger (class in molgri.logfiles)
PtParser (class in molgri.molecules.parsers)
PtWriter (class in molgri.molecules.writers)
Q
quaternion2grid() (in module molgri.space.rotations)
quaternion_in_array() (in module molgri.assertions)
R
random_axes_count_points() (in module molgri.space.analysis)
random_quaternions() (in module molgri.space.utils)
random_quaternions_count_points() (in module molgri.space.analysis)
random_sphere_points() (in module molgri.space.utils)
RandomERotations (class in molgri.space.rotobj)
randomise_quaternion_set_signs() (in module molgri.space.utils)
RandomQRotations (class in molgri.space.rotobj)
RepresentationCollection (class in molgri.plotting.abstract)
rotate_about_body() (molgri.molecules.parsers.ParsedMolecule method)
rotate_about_origin() (molgri.molecules.parsers.ParsedMolecule method)
rotate_to() (molgri.molecules.parsers.ParsedMolecule method)
rotation2grid() (in module molgri.space.rotations)
rotation2grid4vector() (in module molgri.space.rotations)
S
save_full_grid() (molgri.space.fullgrid.FullGrid method)
save_grid() (molgri.space.rotobj.SphereGridNDim method)
save_or_use_saved() (in module molgri.wrappers)
save_uniformity_statistics() (molgri.space.rotobj.SphereGridNDim method)
second_neighbours() (in module molgri.space.polytopes)
set_c_r() (molgri.molecules.parsers.ParsedTrajectory method)
set_log_scale() (molgri.plotting.abstract.MultiRepresentationCollection method)
show_anim_in_jupyter() (in module molgri.plotting.abstract)
SimulationHistogram (class in molgri.molecules.transitions)
skew() (in module molgri.space.rotations)
SphereGridFactory (class in molgri.space.rotobj)
SphereGridNDim (class in molgri.space.rotobj)
SphereGridPlot (class in molgri.plotting.spheregrid_plots)
SQRA (class in molgri.molecules.transitions)
standardise_quaternion_set() (in module molgri.space.utils)
sum_increments_from_first_radius() (molgri.space.translations.TranslationParser method)
SystemERotations (class in molgri.space.rotobj)
T
third_neighbours() (in module molgri.space.polytopes)
time_method() (in module molgri.wrappers)
TrajectoryPlot (class in molgri.plotting.molecule_plots)
TransitionModel (class in molgri.molecules.transitions)
TransitionPlot (class in molgri.plotting.transition_plots)
translate() (molgri.molecules.parsers.ParsedMolecule method)
translate_radially() (molgri.molecules.parsers.ParsedMolecule method)
translate_to_origin() (molgri.molecules.parsers.ParsedMolecule method)
TranslationParser (class in molgri.space.translations)
two_sets_of_quaternions_equal() (in module molgri.assertions)
two_vectors2rot() (in module molgri.space.rotations)
U
unify_axis_limits() (molgri.plotting.abstract.MultiRepresentationCollection method)
unique_quaternion_set() (in module molgri.space.utils)
V
vector_within_alpha() (in module molgri.space.analysis)
W
write_frames_in_directory() (molgri.molecules.writers.PtWriter method)
write_full_pt() (molgri.molecules.writers.PtWriter method)
write_statistics() (in module molgri.space.analysis)
write_structure() (molgri.molecules.writers.PtWriter method)
X
XVGParser (class in molgri.molecules.parsers)
Z
ZeroRotations (class in molgri.space.rotobj)
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